Nigel Savery: search on Z-Library

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1

A Multi-Functional Synthetic Gene Network: A Frequency Multiplier, Oscillator and Switch

Purcell, Oliver, di Bernardo, Mario, Grierson, Claire S., Savery, Nigel J., Peccoud, Jean

Journal:

Year:

2011

Language:

english

File:

PDF, 773 KB

english, 2011

2

In-Silico Analysis and Implementation of a Multicellular Feedback Control Strategy in a Synthetic Bacterial Consortium

Fiore, Gianfranco, Matyjaszkiewicz, Antoni, Annunziata, Fabio, Grierson, Claire, Savery, Nigel J., Marucci, Lucia, di Bernardo, Mario

Journal:

ACS Synthetic Biology

Year:

2017

Language:

english

File:

PDF, 2.36 MB

english, 2017

3

BSim 2.0: an advanced agent-based cell simulator

Matyjaszkiewicz, Antoni, Fiore, Gianfranco, Annunziata, Fabio, Grierson, Claire, Savery, Nigel, Marucci, Lucia, di Bernardo, Mario

Journal:

ACS Synthetic Biology

Year:

2017

Language:

english

File:

PDF, 2.24 MB

english, 2017

4

In Vivo Feedback Control of an Antithetic Molecular-Titration Motif in Escherichia coli Using Microfluidics

Shannon, Barbara, Zamora-Chimal, Criseida G., Postiglione, Lorena, Salzano, Davide, Grierson, Claire S., Marucci, Lucia, Savery, Nigel J., di Bernardo, Mario

Journal:

ACS Synthetic Biology

Year:

2020

File:

PDF, 1.75 MB

2020

5

Analysis of interactions between Activating Region 1 of Escherichia coli FNR protein and the C-terminal domain of the RNA polymerase α subunit: use of alanine scanning and suppression genetics

David J. Lee, Helen J. Wing, Nigel J. Savery, Stephen J. W. Busby

Journal:

Molecular Microbiology

Year:

2000

Language:

english

File:

PDF, 320 KB

english, 2000

6

Characterisation of theEscherichia coli mfdpromoter

Louise K. Stanley, Nigel J. Savery

Journal:

Archives of Microbiology

Year:

2003

Language:

english

File:

PDF, 207 KB

english, 2003

7

Medium Term Planning of Biopharmaceutical Manufacture using Mathematical Programming

Kais Lakhdar, Yuhong Zhou, James Savery, Nigel J. Titchener-Hooker, Lazaros G. Papageorgiou

Journal:

Biotechnology Progress

Year:

2005

Language:

english

File:

PDF, 846 KB

english, 2005

8

Transcription coupled nucleotide excision repair in Escherichia coli can be affected by changing the arginine at position 529 of the β subunit of RNA polymerase

Ann K. Ganesan, Abigail J. Smith, Nigel J. Savery, Portia Zamos, Philip C. Hanawalt

Journal:

Year:

2007

Language:

english

File:

PDF, 584 KB

english, 2007

9

Effects of the bacterial transcription-repair coupling factor during transcription of DNA containing non-bulky lesions

Abigail J. Smith, Nigel J. Savery

Journal:

Year:

2008

Language:

english

File:

PDF, 899 KB

english, 2008

10

The unstructured C-terminal extension of UvrD interacts with UvrB, but is dispensable for nucleotide excision repair

Laura Manelyte, Colin P. Guy, Rachel M. Smith, Mark S. Dillingham, Peter McGlynn, Nigel J. Savery

Journal:

Year:

2009

Language:

english

File:

PDF, 926 KB

english, 2009

11

The bacterial transcription repair coupling factor

Alexandra M Deaconescu, Nigel Savery, Seth A Darst

Journal:

Current Opinion in Structural Biology

Year:

2007

Language:

english

File:

PDF, 1.08 MB

english, 2007

12

The conflict between DNA replication and transcription

Peter McGlynn, Nigel J. Savery, Mark S. Dillingham

Journal:

Molecular Microbiology

Year:

2012

Language:

english

File:

PDF, 378 KB

english, 2012

13

Initiation of transcription-coupled repair characterized at single-molecule resolution

Howan, Kévin, Smith, Abigail J., Westblade, Lars F., Joly, Nicolas, Grange, Wilfried, Zorman, Sylvain, Darst, Seth A., Savery, Nigel J., Strick, Terence R.

Journal:

Year:

2012

Language:

english

File:

PDF, 5.72 MB

english, 2012

14

Structural Basis for Bacterial Transcription-Coupled DNA Repair

Alexandra M. Deaconescu, Anna L. Chambers, Abigail J. Smith, Bryce E. Nickels, Ann Hochschild, Nigel J. Savery, Seth A. Darst

Journal:

Year:

2006

Language:

english

File:

PDF, 1.13 MB

english, 2006

15

Regulation and Rate Enhancement during Transcription-Coupled DNA Repair

Laura Manelyte, Young-In T. Kim, Abigail J. Smith, Rachel M. Smith, Nigel J. Savery

Journal:

Year:

2010

Language:

english

File:

PDF, 1.11 MB

english, 2010

16

The molecular mechanism of transcription-coupled DNA repair

Nigel J. Savery

Journal:

Trends in Microbiology

Year:

2007

Language:

english

File:

PDF, 862 KB

english, 2007

17

Transcription Factors || Protein-Protein Interactions during Transcription Activation: The Case of the Escherichia coli Cyclic AMP Receptor Protein

Nigel Savery, Virgil Rhodius and Stephen Busby

Journal:

Philosophical Transactions Biological Sciences

Year:

1996

Language:

english

File:

PDF, 1.08 MB

english, 1996

18

A reverse gear for transcription-coupled DNA repair? (Comment on DOI 10.1002/bies.201400106)

Journal:

Year:

2015

Language:

english

File:

PDF, 37 KB

english, 2015

19

Interactions between the cyclic AMP receptor protein and the Alpha subunit of RNA polymerase at the Escherichia Coli galactose operon P1 Promoter

Attey, Adrian, Belyaeva, Tamara, savery, Nigel, Hoggett, Jim, Fujita, Nobuyuki, Ishihama, AKira, Busby, Stephen

Journal:

Nucleic Acids Research

Year:

1994

Language:

english

File:

PDF, 6.55 MB

english, 1994

20

Single-Molecule Analysis of Transcription-Coupled Repair

Fan, Jun, Savery, Nigel, Joly, Nicolas, Strick, Terence

Journal:

Biophysical Journal

Year:

2015

Language:

english

File:

PDF, 44 KB

english, 2015

21

Prioritizing the repair of DNA damage that is encountered by RNA polymerase

Journal:

Year:

2011

Language:

english

File:

PDF, 1.22 MB

english, 2011

22

Reconstruction of bacterial transcription-coupled repair at single-molecule resolution

Fan, Jun, Leroux-Coyau, Mathieu, Savery, Nigel J., Strick, Terence R.

Journal:

Year:

2016

Language:

english

File:

PDF, 12.88 MB

english, 2016

23

Interactions between the Escherichia coli cAMP receptor protein and the C-terminal domain of the α subunit of RNA polymerase at Class I promoters

LAW, Emma C., SAVERY, Nigel J., BUSBY, Stephen J.W.

Journal:

Biochemical Journal

Year:

1999

Language:

english

File:

PDF, 321 KB

english, 1999

24

Spacing requirements for interactions between the C-terminal domain of the α subunit of Escherichia coli RNA polymerase and the cAMP receptor protein

LLOYD, S. Georgina, BUSBY, J. W. Stephen, SAVERY, J. Nigel

Journal:

Biochemical Journal

Year:

1998

Language:

english

File:

PDF, 874 KB

english, 1998

25

Interactions between the Escherichia coli cAMP receptor protein and the C-terminal domain of the α subunit of RNA polymerase at Class I promoters

LAW, Emma C., SAVERY, Nigel J., BUSBY, Stephen J. W.

Journal:

Biochemical Journal

Year:

1999

Language:

english

File:

PDF, 321 KB

english, 1999

26

Length heterogeneity at conserved sequence block 2 in human mitochondrial DNA acts as a rheostat for RNA polymerase POLRMT activity

Tan, Benedict G., Wellesley, Frederick C., Savery, Nigel J., Szczelkun, Mark D.

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 9.22 MB

english, 2016

27

Signal integration and decision making in Escherichia coli: A biological implementation of negative feedback control systems

Annunziata, Fabio, Fiore, Gianfranco, Matyjaszkiewicz, Antoni, Grierson, Claire, Marucci, Lucia, di Bernardo, Mario, Savery, Nigel J.

Journal:

New Biotechnology

Year:

2016

Language:

english

File:

PDF, 60 KB

english, 2016

28

Understanding bias in DNA repair

Strick, Terence R., Savery, Nigel J.

Journal:

Proceedings of the National Academy of Sciences

Year:

2017

Language:

english

File:

PDF, 592 KB

english, 2017

29

[IEEE 2016 IEEE 55th Conference on Decision and Control (CDC) - Las Vegas, NV, USA (2016.12.12-2016.12.14)] 2016 IEEE 55th Conference on Decision and Control (CDC) - Design of a multicellular feedback control strategy in a synthetic bacterial consortium

Fiore, Gianfranco, Matyjaszkiewicz, Antoni, Annunziata, Fabio, Grierson, Claire, Savery, Nigel J., Marucci, Lucia, di Bernardo, Mario

Year:

2016

Language:

english

File:

PDF, 363 KB

english, 2016

30

The structure and function of an RNA polymerase interaction domain in the PcrA/UvrD helicase

Sanders, Kelly, Lin, Chia-Liang, Smith, Abigail J., Cronin, Nora, Fisher, Gemma, Eftychidis, Vasileios, McGlynn, Peter, Savery, Nigel J., Wigley, Dale B., Dillingham, Mark S.

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 2.48 MB

english, 2017

31

An Orthogonal Multi-input Integration System to Control Gene Expression in Escherichia coli

Annunziata, Fabio, Matyjaszkiewicz, Antoni, Fiore, Gianfranco, Grierson, Claire S., Marucci, Lucia, di Bernardo, Mario, Savery, Nigel J.

Journal:

ACS Synthetic Biology

Year:

2017

Language:

english

File:

PDF, 1.75 MB

english, 2017

32

The Conserved C-Terminus of the PcrA/UvrD Helicase Interacts Directly with RNA Polymerase

Gwynn, Emma J., Smith, Abigail J., Guy, Colin P., Savery, Nigel J., McGlynn, Peter, Dillingham, Mark S., Spies, Maria

Journal:

Year:

2013

Language:

english

File:

PDF, 1.15 MB

english, 2013

33

BSim: An Agent-Based Tool for Modeling Bacterial Populations in Systems and Synthetic Biology

Gorochowski, Thomas E., Matyjaszkiewicz, Antoni, Todd, Thomas, Oak, Neeraj, Kowalska, Kira, Reid, Stephen, Tsaneva-Atanasova, Krasimira T., Savery, Nigel J., Grierson, Claire S., di Bernardo, Mario, M

Journal:

Year:

2012

Language:

english

File:

PDF, 461 KB

english, 2012

34

Inhibiting translation elongation can aid genome duplication in Escherichia coli

Myka, Kamila K., Hawkins, Michelle, Syeda, Aisha H., Gupta, Milind K., Meharg, Caroline, Dillingham, Mark S., Savery, Nigel J., Lloyd, Robert G., McGlynn, Peter

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 6.36 MB

english, 2017

35

Guiding biomolecular interactions in cells using de novo protein-protein interfaces

Smith, Abigail J, Thomas, Franziska, Shoemark, Deborah, Woolfson, Derek N., Savery, Nigel J.

Journal:

ACS Synthetic Biology

Year:

2019

File:

PDF, 6.30 MB

2019

36

A low-cost, open-source Turbidostat design for in-vivo control experiments in Synthetic Biology

Guarino, Agostino, Shannon, Barbara, Marucci, Lucia, Grierson, Claire, Savery, Nigel, di Bernardo, Mario

Journal:

IFAC-PapersOnLine

Year:

2019

File:

PDF, 1.29 MB

2019

37

De novo designed protein-interaction modules for in-cell applications

Edgell, Caitlin L, Smith, Abigail J, Beesley, Joseph L, Savery, Nigel J., Woolfson, Derek N.

Journal:

ACS Synthetic Biology

Year:

2020

File:

PDF, 827 KB

2020

38

Robust de novo designed homotetrameric coiled coils

Edgell, Caitlin L, Savery, Nigel J., Woolfson, Derek N.

Journal:

Year:

2020

File:

PDF, 990 KB

2020